ybbC [2018-07-26 16:44:13]

unknown

locus: BSU01650

pI: 7.37

mw: 45.87 kDa

protein length: 414 aa

gene length: 1242 bp

function: unknown

product: unknown

essential: no

synonyms: yzbB

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]

Gene

Coordinates: 185,194 → 186,438

The protein

Structure

• [PDB|4K05] (from Bacteroides fragilis, 43% identity)

Expression and Regulation

Operons

• genes: [gene|0B1F43F43A4DC1574A153DBFBAA5D0A1855F9B61|murQ]-[gene|125872506C400CB6B3DAEA8B5130B064DFBA4494|murR]-[gene|178D5E2AA1225FE909E6F2B63B3595F5ABB8E7A2|murP]-[gene|DEACFD435DB01C4B3ADEF397BEE08E2E7C7FCC36|amiE]-[gene|A5D4BF262BD365DCEBA9358C8DB295E605DE4D84|nagZ]-[gene|005D37F34CA3D6891F7D8FF7A2AFA1CBCB556FFE|ybbC]
  description: [Pubmed|22383849]

  regulatory mechanism

  • [protein|125872506C400CB6B3DAEA8B5130B064DFBA4494|MurR]: repression, [pubmed|30038046], in [regulon|125872506C400CB6B3DAEA8B5130B064DFBA4494|MurR regulon]

  regulation

  • expressed in late exponential and early stationary phase [Pubmed|20400549]

Biological materials

Mutant

• BKE01650 (Δ[gene|005D37F34CA3D6891F7D8FF7A2AFA1CBCB556FFE|ybbC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE01650 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGTTTTTCTCATGTGTCCCT, downstream forward: _UP4_TAGAACATAAGCATCGTATG
• BKK01650 (Δ[gene|005D37F34CA3D6891F7D8FF7A2AFA1CBCB556FFE|ybbC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK01650 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGTTTTTCTCATGTGTCCCT, downstream forward: _UP4_TAGAACATAAGCATCGTATG

References

• 22383849